Publications
* These authors contributed equally to the work.
2015
Ceol A, Muller H,
The MI Bundle: Enabling Network and Structural Biology in genome visualization tools.
Mosca R, Tenorio-Laranga J, Olivella R, Alcalde V, Ceol A, Soler-López M, Aloy P,
dSysMap: Exploring the edgetic role of disease mutations.
Masseroli M, Pinoli P, Venco F, Kaitoua A, Jalili V, Palluzzi F, Muller H, Ceri S
GenoMetric Query Language: A novel approach to large-scale genomic data management.
Angione C*, Costanza J*, Carapezza P, Lió P, Nicosia P
Analysis and design of molecular machines.
2014
Costanza J, Zammataro L, Nicosia G
Programming Living Machines: the case study of Escherichia coli. (Book chapter)
Biomimetic and Biohybrid Systems, Third International Conference, Living Machines 2014, Milan, Italy, July 30 – August 1, 2014.
Proceedings, Lecture Notes in Computer Science Volume 8608, 2014, pp 377-379
10.1007/978-3-319-09435-9_35
Sabo A, ..., Muller H, Guccione E, Campaner S, Amati B
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.
Muller H, Marzi MJ, Nicassio F
IsomiRage: From Functional Classification to Differential Expression of miRNA Isoforms.
Blasche S, Arens S, Ceol A., Siszler G, Schmidt MA, Häuser R, Schwarz F, Wuchty S, Aloy P, Uetz P, Stradal T, Kögl M
The EHEC-host interactome reveals novel targets for the translocated intimin receptor
Venco F*, Vaskin Y* , Ceol A., Muller H.
SMITH: A LIMS for handling next-generation sequencing workflows
BMC Bioinformatics (accepted), 2014
Hauser R, Ceol A, Rajagopala SV, Mosca R, Siszler G, Wermke N, Sikorski P, Schwarz F, Schick M, Wuchty S, Aloy P, Uetz P
A Second-generation Protein-Protein Interaction Network of Helicobacter pylori.
Zammataro L., De Molfetta R., Bucci G., Ceol A., Muller H.
AnnotateGenomicRegions: A web application.
2013
Mosca R.*, Ceol A.*, Stein A., Olivella R., Aloy P.
3did: a catalogue of domain-based interactions of known three-dimensional structure.
Mosca R.*, Pons T.*, Ceol A.*, Valencia A., Aloy P.
Towards a detailed atlas of protein-protein interactions.
Ficara F., Crisafulli L., Lin C., Iwasaki M., Smith K. S., Zammataro L., Cleary M. L.
Pbx1 restrains myeloid maturation while preserving lymphoid potential in hematopoietic progenitors.
Dellino G. I., Cittaro D., Piccioni R., Luzi L., Banfi S., Segalla S., Cesaroni M. et al.
Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Fragola G., Germain P.-L., Laise P., Cuomo A., Blasimme A., Gross F., Signaroldi E., Bucci G. et al.
Cell reprogramming requires silencing of a core subset of polycomb targets.
Giovarelli M., Bucci G., Pasero M., Gherzi R., Briata P.
KSRP silencing favors neural differentiation of P19 teratocarcinoma cells.
2012
Marzi M. J., Puggioni E. M. R., Dall Olio V., Bucci G., Bernard L., Bianchi F., Crescenzi M. et al.
Differentiation-associated microRNAs antagonize the Rb-E2F pathway to restrict proliferation.
Pasero M., Giovarelli M., Bucci G., Gherzi R., Briata P.
Bone morphogenetic protein/SMAD signaling orients cell fate decision by impairing KSRP-dependent microRNA maturation.
Fumagalli M., Rossiello F., Clerici M., Barozzi S., Cittaro D., Kaplunov J. M., Bucci G. et al.
Telomeric DNA damage is irreparable and causes persistent DNA-damage-response activation.
Perna D., Faga G., Verrecchia A., Gorski M., ..., Muller H., Amati B.
Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts.
Mariani L., Chiroli E., Nezi L., Muller H., Piatti S., Musacchio A., Ciliberto A.
Role of the Mad2 dimerization interface in the spindle assembly checkpoint independent of kinetochores.