Computational Research IIT@SEMM: AnnotateGenomicRegions
Credits
Credits: Computational Research IIT@SEMM. Copyright 2011-2014 by IIT@SEMM. All rights reserved. Developed using JSF and PrimeFaces
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Annotation History
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Step 1: Choose number of your custom annotation files and their assembly version.

Number of custom annotations
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • 10
Genome assemblies
  • hg19
  • hg18
  • mm10
  • mm9
  • mm8
  • danRer7
  • sacCer3
  • sacCer2

Step 2: Upload your custom tab delimited annotation files.

When selected reports all overlapping annotations. When unselected reports only first overlapping annotation.
report muliple overlaps
Adjust column indices if necessary. Start counting at 1.
Choose
overlap
neighbor

Step 3: Paste or upload genomic regions to annotate and submit.

Paste for example
chr1:7577506-7577606
Chr2:7,577,506-7,577,606
CHR3:7577506-7,577,606
or white space separated
chr1 7577506 7577606
Chr2 7,577,506 7,577,606
CHR3 7577506 7,577,606
Paste example regions
Clear current regions
Submit regions
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