Computational Research IIT@SEMM: AnnotateGenomicRegions
Credits
Credits: Computational Research IIT@SEMM. Copyright 2011-2014 by IIT@SEMM. All rights reserved. Developed using JSF and PrimeFaces
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Annotation History
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Step 1: Choose genome assembly.

Genome assemblies
  • hg19
  • hg18
  • mm10
  • mm9
  • mm8
  • danRer7
  • sacCer3
  • sacCer2

Step 2: Upload your custom tab delimited annotation file (must have strand information, can be unsorted).

Adjust column indices if necessary. Start counting at 1.
Choose
find distance to
  • 5prime
  • 3prime
  • start
  • end
  • center

Step 3: Paste or upload genomic regions to annotate and submit.

Paste for example
chr1:7577506-7577606
Chr2:7,577,506-7,577,606
CHR3:7577506-7,577,606
or white space separated
chr1 7577506 7577606
Chr2 7,577,506 7,577,606
CHR3 7577506 7,577,606
find distance to:
  • start
  • end
  • center
Paste example regions
Clear current regions
Submit regions
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